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Yongming Liu, Jingtao Qu, Ling Zhang, Xiangyu Xu, Gui Wei, Zhuofan Zhao, Maozhi Ren & Moju Cao. Identification and characterization of the TCA cycle genes in maize. BMC Plant Biology. 19, Article number: 592 (2019). doi:10.1186/s12870-019-2213-0
来源：BMC Plant Biology
发布时间：2019-12-28
作者：刘永明(第一作者) 任茂智(通讯作者)
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| 作者: Liu, YM (Liu, Yongming); Qu, JT (Qu, Jingtao); Zhang, L (Zhang, Ling); Xu, XY (Xu, Xiangyu); Wei, G (Wei, Gui); Zhao, ZF (Zhao, Zhuofan); Ren, MZ (Ren, Maozhi); Cao, MJ (Cao, Moju) | ||||||||
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| 影响因子 (2018 年): 3.670 | ||||||||
| 摘要: BackgroundThe tricarboxylic acid (TCA) cycle is crucial for cellular energy metabolism and carbon skeleton supply. However, the detailed functions of the maize TCA cycle genes remain unclear.ResultsIn this study, 91 TCA genes were identified in maize by a homology search, and they were distributed on 10 chromosomes and 1 contig. Phylogenetic results showed that almost all maize TCA genes could be classified into eight major clades according to their enzyme families. Sequence alignment revealed that several genes in the same subunit shared high protein sequence similarity. The results of cis-acting element analysis suggested that several TCA genes might be involved in signal transduction and plant growth. Expression profile analysis showed that many maize TCA cycle genes were expressed in specific tissues, and replicate genes always shared similar expression patterns. Moreover, qPCR analysis revealed that some TCA genes were highly expressed in the anthers at the microspore meiosis phase. In addition, we predicted the potential interaction networks among the maize TCA genes. Next, we cloned five TCA genes located on different TCA enzyme complexes, Zm00001d008244 (isocitrate dehydrogenase, IDH), Zm00001d017258 (succinyl-CoA synthetase, SCoAL), Zm00001d025258 (alpha -ketoglutarate dehydrogenase, alpha KGDH), Zm00001d027558 (aconitase, ACO) and Zm00001d044042 (malate dehydrogenase, MDH). Confocal observation showed that their protein products were mainly localized to the mitochondria; however, Zm00001d025258 and Zm00001d027558 were also distributed in the nucleus, and Zm00001d017258 and Zm00001d044042 were also located in other unknown positions in the cytoplasm. Through the bimolecular fluorescent complimentary (BiFC) method, it was determined that Zm00001d027558 and Zm00001d044042 could form homologous dimers, and both homologous dimers were mainly distributed in the mitochondria. However, no heterodimers were detected between these five genes. Finally, Arabidopsis lines overexpressing the above five genes were constructed, and those transgenic lines exhibited altered primary root length, salt tolerance, and fertility.ConclusionSequence compositions, duplication patterns, phylogenetic relationships, cis-elements, expression patterns, and interaction networks were investigated for all maize TCA cycle genes. Five maize TCA genes were overexpressed in Arabidopsis, and they could alter primary root length, salt tolerance, and fertility. In conclusion, our findings may help to reveal the molecular function of the TCA genes in maize. | ||||||||
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| 语言: English | ||||||||
| 文献类型: Article | ||||||||
| 作者关键词: Maize; TCA cycle; Root development; Salt stress; Plant fertility | ||||||||
| KeyWords Plus: TRICARBOXYLIC-ACID CYCLE; MITOCHONDRIAL-COMPLEX-II; MALATE-DEHYDROGENASE; ISOCITRATE DEHYDROGENASE; TRANSCRIPTION FACTORS; ANTISENSE INHIBITION; NUCLEAR-LOCALIZATION; ROOT-GROWTH; ARABIDOPSIS; EXPRESSION | ||||||||
| 地址: [Liu, Yongming; Ren, Maozhi] Chinese Acad Agr Sci, Inst Urban Agr, Chengdu 610213, Sichuan, Peoples R China. [Liu, Yongming; Ren, Maozhi] Chengdu Natl Agr Sci & Technol Ctr, Chengdu 610213, Sichuan, Peoples R China. [Liu, Yongming; Qu, Jingtao; Zhang, Ling; Wei, Gui; Zhao, Zhuofan; Cao, Moju] Sichuan Agr Univ, Maize Res Inst, Key Lab Biol & Genet Improvement Maize Southwest, Minist Agr, Chengdu 611130, Sichuan, Peoples R China. [Xu, Xiangyu] Univ Ghent, Dept Plant Biotechnol & Bioinformat, B-9052 Ghent, Belgium. [Xu, Xiangyu] VIB Ctr Plant Syst Biol, B-9052 Ghent, Belgium. [Wei, Gui] Sichuan Agr Univ, Coll Agron, Chengdu 611130, Sichuan, Peoples R China. |
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| 通讯作者地址: Ren, MZ (通讯作者)，Chinese Acad Agr Sci, Inst Urban Agr, Chengdu 610213, Sichuan, Peoples R China. Ren, MZ (通讯作者)，Chengdu Natl Agr Sci & Technol Ctr, Chengdu 610213, Sichuan, Peoples R China. Cao, MJ (通讯作者)，Sichuan Agr Univ, Maize Res Inst, Key Lab Biol & Genet Improvement Maize Southwest, Minist Agr, Chengdu 611130, Sichuan, Peoples R China. |
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| 电子邮件地址: renmaozhi01@caas.cn; mojupp@163.com | ||||||||
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| Web of Science 类别: Plant Sciences | ||||||||
| 研究方向: Plant Sciences | ||||||||
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This work was supported by grants from the National Key Research and Development Program of China (No. 2016YFD0101206); Chengdu Agricultural Science and Technology Center local financial special fund project (NASC2019TI13); and the Fundamental Research Funds for the Central Institutes (19-001-09). The funding bodies were not involved in the design of the study, collection, analysis, and interpretation of data, and in writing the manuscript. |
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